PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g008240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 395aa    MW: 43863 Da    PI: 6.518
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g008240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.3e-10205260560
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l 
  Csa14g008240.1 205 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLA 260
                     9*****************************************99988877666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-15201265IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829203266IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.7E-10205260No hitNo description
SuperFamilySSF579592.04E-10205256No hitNo description
PfamPF001701.7E-8205259IPR004827Basic-leucine zipper domain
CDDcd147033.87E-23206255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
IVSLSLSLSF LRRSSFHFIE RESFHLHHSL SPLCIVLSPN ILIIRFNFHF LGFQNSKMEK  60
SSDSKFSDPI PLPNNPNADP IPPSSFHRRS RSDDMSMFMF MDPLSSGAPP SSDDLPSDDD  120
LFSSFIDVDS LTSNPNPFPN QSLSSNSASG ANPNPPPPPQ SSSRPRHRHS NSVDAGCAMY  180
AGEIMDAKKA MPPEKLSELW NIDPKRAKRI LANRQSAARS KERKARYIQE LERKVQSLQT  240
EATTLSAQLT LYQRDTNGLA NENTELKLRL QAMEQQAQLR NALNEALRKE VERMKMETGE  300
ISGNSDSFDM GMQQIQYSSS TFMAIPPYHG SMNGQDMQQM HTSFNNPMEM SNSQSVSDFL  360
QNGRLQGLEI SSNSSSLVKS EGPSLSASES SSAY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198520.0AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAY0624740.0AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBankBT0001020.0BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457837.10.0PREDICTED: transcription factor RF2b-like
SwissprotQ6S4P43e-81RF2B_ORYSJ; Transcription factor RF2b
TrEMBLR0IIC00.0R0IIC0_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0001_6231e-169(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-136basic leucine-zipper 52